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Mosaic v3.17.0 documentation

  • License
  • Installation
  • Getting Started
  • Data structure
  • Cohort Analysis Pipeline
  • Vignettes
    • Overview of mosaic
    • Filtering barcodes and ids
    • Manual CNV analysis
    • Plot customizations
    • Multisample analysis
    • Additional plots and customizations
    • Code Snippets
  • Curated Jupyter Notebooks
    • Single Sample DNA-only
    • Multisample DNA-only
    • Single Sample DNA + Protein
    • Multisample DNA + Protein
    • Single sample GE+Protein
    • Single Sample DNA + RNA
    • Clonal Insights snippets
  • Additional resources
  • Changelog

Basic Classes

  • _Assay
  • Dna
  • Cnv
  • Protein
  • Ge
  • Rna
  • Sample
  • SampleGroup

Interactive Workflows

  • CopyNumber
  • VariantSubcloneTable

Algorithms

  • NSP
  • GroupByGenotype
  • COMPASS
  • SPARC

Functional Modules

  • io
  • utils
  • constants

Custom Plots

  • Heatmap
  • LinePlot
  • BarGraph
  • MultiMap
  • PhyloTree
  • Fishplot

DNA assignment

  • Truth
  • LikelihoodMethod
  • DnaAssignment

Protein assignment

  • Truth
  • LikelihoodMethod
  • ProbabilityMethod

Python Module Index

m
 
m
- missionbio
    missionbio.mosaic.constants
    missionbio.mosaic.io
    missionbio.mosaic.utils

By Saurabh Parikh

© Copyright 2026, Mission Bio.