constants

missionbio.mosaic.constants

Keys used for various layers, row attributes and column attributes

ANNOTATED	Name of the metadata which stores whether the annotations have been pulled using get_annotations()
ANNOTATION_COLUMNS	Name of the column attribute in which the variant annotations are stored.
ADO_PARENTS	Name of the column in which the parents of the ADO clones are stored.
ADO_SISTERS	Name of the column in which the sisters of the ADO clones are stored.
ADO_SCORE	Name of the column in which the ADO scores of the clones are stored.
AF_FILTERED	Name of the row attribute in which the AF_MISSING values are stored.
AF_MISSING	Name of the row attribute in which the AF_MISSING values are stored.
COLORS	Built-in mutable sequence.
GENE_NAME	Name of the column attribute in which the CNV gene names are stored when pulled using get_gene_names()
LABEL	Name of the row attribute in which the labels are stored.
NGT_FILTERED	Name of the row attribute in which the NGT_FILTERED values are stored.
NORMALIZED_READS	Name of the layer in which the normalized read counts are stored.
ORG_BARCODE	Name of the column attribute in which the original barcodes are stored.
ORIGINAL_ID	Name of the column attribute in which the original IDs are stored.
PALETTE	Name of the metadata attribute in which the palette is stored in saved h5 files.
PCA_LABEL	Name of the layer in which the PCA coordinates are stored.
PLOIDY	Name of the layer in which the CNV ploidy values are stored.
READS	Name of the layer in which the read counts are stored.
SCALED_LABEL	Name of the layer in which the scaled counts are stored.
UMAP_LABEL	Name of the layer in which the UMAP coordinates are stored.