DnaAssignment#
missionbio.mosaic.algorithms.dna_assignment.DnaAssignment
- class DnaAssignment(truth: DataFrame, add_doublets: bool = True)#
A wrapper for the missionbio.demultiplex module.
- Parameters:
- truthpd.DataFrame.
DataFrame with the cell lines in the index and the variants in the columns. The values should be NGT-like {0, 1, 2, 3} or AF-like {0, 50, 100, -50}. When
add_doublets
is False, the AF values can also contain {25, 75} i.e. the values for mixed cells.- add_doubletsbool
Whether to add doublets to the truth