Vignettes#
For standard analysis see Curated Jupyter Notebooks.
This is a collection of Jupyter notebooks demonstrating the use of the mosaic package. These are not meant to be representative of all the functionality of the package, but rather to provide a starting point for users to explore the package and its capabilities. The notebooks are meant to be read in the order they are listed below, as they build on each other. The objective is to explain the package architecture to enable the user to create their own custom plots and workflows.
Note
load_example_dataset() is used in various vignettes. This
downloads a small example dataset from the Mission Bio GitHub. It can be replaced with
load() to load a dataset from a local directory.
Vignette Link |
Description |
|---|---|
Overview of the package and its functionality |
|
Filtering the data and plotting the results |
|
Plotting copy number data |
|
Options to customize the plots |
|
Performing multi-sample analysis |
|
Additional plots not directly available in mosaic. |
|
Snippets of code showcasing various features of the package |