SampleGroup#
missionbio.mosaic.samplegroup.SampleGroup
- class SampleGroup(samples: Iterable[Sample])#
A group of samples related to each other
- The following constraints are imposed on the samples
All samples must have the same assays.
All the assay ids must be common.
>>> import missionbio.mosaic as ms >>> group = ms.load_example_dataset('Multisample PBMC')
The group contains the samples attribute to access individual samples
>>> group.samples
Checkout the multi sample analysis vignette for more details.
Functions#
hasassay(name)Checks if the assay is present in the samples
getassays(name)Get a list of the given assay across samples
merge_assay([assay_name])Merges an assay across multiple samples into 1 Assay.
merge()Merge all the samples into on Sample object.
apply(func[, args_list, kwargs_list])Apply provided function to all items
Multi-sample visualizations#
barplot([assay, sample_order, label_order, ...])Draws a bar plot of label counts for each sample
fishplot([assay, labels, parents, ...])Draws a fish plot and (optionally) graphical representation of the hierarchy of subclones.
Errors#
IncompatibleSamplesError