LikelihoodMethod

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LikelihoodMethod#

missionbio.demultiplex.protein.pace.likelihood.LikelihoodMethod

class LikelihoodMethod(protein: Assay, truth: Truth, min_distance_for_doublet: int = 3, **kwargs: Any)#

A PACE method to categorize the cells into the most likely category based on the given truth.

Parameters:

  • protein – The protein assay

  • truth – A Truth object

  • min_distance_for_doublet – The minimum number of antibodies that must be different between two clones for their doublet to be considered.

  • kwargs – The other parameters passed to PACEModel.

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