LikelihoodMethod.cluster_truth

LikelihoodMethod.cluster_truth#

missionbio.demultiplex.protein.pace.likelihood.LikelihoodMethod.cluster_truth

LikelihoodMethod.cluster_truth(unassigned: bool = True, trim: bool = True) → Truth#

The truth that defines the clusters in the protein assay

This can be used to generate a new truth after clustering the protein assay. This new truth can then be used to label other protein assay assuming that the same cell types are present in that assay.

Parameters:

  • unassigned – Whether to add the ‘Unassigned’ cluster to the truth

  • trim – Whether to trim the truth to only include the cells in the protein assay

Returns:

Truth object

< Class LikelihoodMethod

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