Ge

missionbio.mosaic.ge.Ge

class Ge(*args, **kwargs)

Container for GE data.

Inherits most methods from _Assay. See that for the documentation on other methods and visualizations.

Filtering

filter_variants([min_gq, min_dp, min_af])

Filter variants based on genotype quality, depth, and allele frequency.

Assay Annotations

get_final_edit_status([edit_mode])	Get the final_edit_status DataFrame for the given edit mode.
get_all_variants_table([edit_mode])	Get the all_variants_table DataFrame for the given edit mode.
get_target_modifications(target)	Get the target modifications DataFrame for the specified target.

Parameters:

argslist

To be passed to the _Assay class.

kwargsdict

To be passed to the _Assay class.