Cnv.normalize_barcodes

missionbio.mosaic.cnv.Cnv.normalize_barcodes

Cnv.normalize_barcodes(allow_duplicates: bool = False) → None

Remove all but [^ACGT] from barcodes

This is needed since some pipelines add tube suffix to the barcodes

Parameters:

allow_duplicates – if True, do not check for duplicate barcodes

Raises:

UserError – when missing barcode dataset or there are duplicate barcodes

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< Class Cnv