Fishplot.__init__#
missionbio.plotting.fishplot.Fishplot.__init__
- Fishplot.__init__(labels: Sequence[str], parents: Sequence[Optional[str]], sample_order: Sequence[str], times: Optional[List[float]], barcode_labels: Sequence[str], barcode_samples: Sequence[str]) None#
- Parameters:
- labelsSequence[str]
The list of labels (i.e. subclones) to include in the plot. All values must be unique.
- parentsSequence[str]
The list of parents for each clone. It must be None for the root clone.
- sample_orderSequence[str]
Names of the samples to include in the plot and the order in which to plot the samples. All values must be unique.
- timeslist[float]
List of relative time points for the samples. Must be the same length as the number of samples. The timepoints will benormalized to between 0 and 1.
- barcode_labelsSequence[str]
The labels for all the barcodes. This value is used to determine the proportions of each clone at each time point
- barcode_samplesSequence[str]
The sample for all the barcodes. This value is used to determine the proportions of each clone at each time point
< Class Fishplot