VariantSubcloneTable.get_clones#
missionbio.mosaic.workflows.variant_subclone_table.VariantSubcloneTable.get_clones
- VariantSubcloneTable.get_clones(variants: List, max_ado_score: float, min_clone_size: float) Tuple[List[Dict], List[Dict], List[Dict]]#
Identifies the clones based on the selected variants
- Parameters:
- variantsList
The variants used to group by genotype
- max_ado_scorefloat
The maximium ADO score before which the clone is grouped into the “ADO” category. This is the GroupByGenotype’s max_ado_score parameter.
- min_clone_sizefloat
The minimum size of the clone under which the clone is grouped into the “small” category. This is the GroupByGenotype’s min_clone_size parameter.
- Returns:
- subclone_dataList[Dict]
The data of the subclone table
- subclone_columnsList[Dict]
Information for each column in the subclone table, the relevant fields are ‘id’, ‘name’, and ‘renamable’
- subclone_cell_styleList[Dict]
The style of the cells. This is used to set the min width of the columns
< Class VariantSubcloneTable