Dna.find_relevant_variants#
missionbio.mosaic.dna.Dna.find_relevant_variants
- Dna.find_relevant_variants(variant_corr_thresh=0.15, variant_cluster_thresh=0.3)#
Variants that vary across clusters.
- Parameters:
- variant_corr_threshfloat [0, 1]
The variant is labeled as relevant if the correlation coeffecient with any other variant is greater than this threshold.
- variant_cluster_threshfloat [0, 1]
The variant is labeled as relevant if the difference in median VAF of two clusters is larger than the threshold.
- Returns:
- variant_keepnp.ndarray
The list of variants that vary across clusters.
< Class Dna