COMPASS.prep_amplicon_reads

COMPASS.prep_amplicon_reads#

missionbio.mosaic.algorithms.compass.COMPASS.prep_amplicon_reads

COMPASS.prep_amplicon_reads(reads_file_name: Union[str, Path], cnv: str = 'CNV')#

Prepare input for phylogeny per-amplicon-read data

Parameters:
reads_file_namestr

The name of the file in which the read counts per region are stored

cnv: str

The type of CNV to call. Possible values are None, “LOH” and “CNV”

< Class COMPASS

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