COMPASS.__init__

missionbio.mosaic.algorithms.compass.COMPASS.__init__

COMPASS.__init__(sample: Sample, somatic_variants: Sequence, min_prob_diff: float = 0.9) → None

Prepare to run COMPASS for the sample

Parameters:

sampleSample

The sample on which COMPASS has to be processed

somatic_variantsSequence

The list of variants used to find the clones

min_prob_difffloat[0, 1]

The minimum difference in probability of assignment of nodes for the cell to be assigned a label. If the difference is less than min_prob_diff then the cell is labeled as “Ambiguous”.

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< Class COMPASS