ProbabilityMethod.assignment_probabilities

ProbabilityMethod.assignment_probabilities#

missionbio.demultiplex.protein.pace.probability.ProbabilityMethod.assignment_probabilities

ProbabilityMethod.assignment_probabilities(expression: DataFrame, truth: Truth) → DataFrame#

Compute the probability of each cell type for each row in the expression matrix

Parameters:

  • expression – The clipped NSP counts for the cluster or cells

  • truth – The truth object. It can contain doublets as well.

Returns:

pd.DataFrame

The probability of each cell type for each row in the expression matrix. The index is the index of expression and the columns are the various cell types in truth

< Class ProbabilityMethod

Contents