NSP.transform

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NSP.transform#

missionbio.demultiplex.protein.nsp.NSP.transform

NSP.transform(reads: ndarray, scale: Optional[float] = None) → ndarray#

Normalize read counts.

Parameters:

  • reads – np.ndarray The protein read counts to be normalized. The shape should be (#cells, #antibodies)

  • scale – Optional[float] The amount by which the read counts are scaled down. This is calculated using NSP.get_scaling_factor if it is not provided.

Returns:

np.ndarray

The normalized read counts with the same shape as the input.

< Class NSP

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