Truth.asfreq#

missionbio.demultiplex.dna.truth.Truth.asfreq

Truth.asfreq(freq: Frequency, method: FillnaOptions | None = None, how: str | None = None, normalize: bool = False, fill_value: Hashable = None) → DataFrame#

Convert time series to specified frequency.

Returns the original data conformed to a new index with the specified frequency.

If the index of this DataFrame is a PeriodIndex, the new index is the result of transforming the original index with PeriodIndex.asfreq (so the original index will map one-to-one to the new index).

Otherwise, the new index will be equivalent to pd.date_range(start, end, freq=freq) where start and end are, respectively, the first and last entries in the original index (see pandas.date_range()). The values corresponding to any timesteps in the new index which were not present in the original index will be null (NaN), unless a method for filling such unknowns is provided (see the method parameter below).

The resample() method is more appropriate if an operation on each group of timesteps (such as an aggregate) is necessary to represent the data at the new frequency.

Parameters:

freqDateOffset or str

Frequency DateOffset or string.

method{‘backfill’/’bfill’, ‘pad’/’ffill’}, default None

Method to use for filling holes in reindexed Series (note this does not fill NaNs that already were present):

‘pad’ / ‘ffill’: propagate last valid observation forward to next valid
‘backfill’ / ‘bfill’: use NEXT valid observation to fill.

how{‘start’, ‘end’}, default end

For PeriodIndex only (see PeriodIndex.asfreq).

normalizebool, default False

Whether to reset output index to midnight.

fill_valuescalar, optional

Value to use for missing values, applied during upsampling (note this does not fill NaNs that already were present).

Returns:

DataFrame: DataFrame object reindexed to the specified frequency.

See also

reindex: Conform DataFrame to new index with optional filling logic.

Notes

To learn more about the frequency strings, please see this link.

Examples

Start by creating a series with 4 one minute timestamps.

>>> index = pd.date_range('1/1/2000', periods=4, freq='T')
>>> series = pd.Series([0.0, None, 2.0, 3.0], index=index)
>>> df = pd.DataFrame({'s': series})
>>> df
                       s
2000-01-01 00:00:00    0.0
2000-01-01 00:01:00    NaN
2000-01-01 00:02:00    2.0
2000-01-01 00:03:00    3.0

Upsample the series into 30 second bins.

>>> df.asfreq(freq='30S')
                       s
2000-01-01 00:00:00    0.0
2000-01-01 00:00:30    NaN
2000-01-01 00:01:00    NaN
2000-01-01 00:01:30    NaN
2000-01-01 00:02:00    2.0
2000-01-01 00:02:30    NaN
2000-01-01 00:03:00    3.0

Upsample again, providing a fill value.

>>> df.asfreq(freq='30S', fill_value=9.0)
                       s
2000-01-01 00:00:00    0.0
2000-01-01 00:00:30    9.0
2000-01-01 00:01:00    NaN
2000-01-01 00:01:30    9.0
2000-01-01 00:02:00    2.0
2000-01-01 00:02:30    9.0
2000-01-01 00:03:00    3.0

Upsample again, providing a method.

>>> df.asfreq(freq='30S', method='bfill')
                       s
2000-01-01 00:00:00    0.0
2000-01-01 00:00:30    NaN
2000-01-01 00:01:00    NaN
2000-01-01 00:01:30    2.0
2000-01-01 00:02:00    2.0
2000-01-01 00:02:30    3.0
2000-01-01 00:03:00    3.0

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Truth.asfreq

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Truth.asfreq#