Protein

class missionbio.mosaic.protein.Protein(*args, **kwargs)

Container for Protein data

Inherits most methods from missionbio.mosaic.assay._Assay. See that for the documentation on other methods and visualizations.

Algorithms

get_signal_profile(ab[, attribute, ...])	Identify the peaks and valleys in the antibody signal
get_scaling_factor([random_state])	Identifies the appropriate scaling factor for oversequenced runs.
normalize_reads([method, jitter, scale, ...])	Normalize read counts.

Protein-specific visualizations

reads_to_ab(**kwargs)	Violin plot for reads taken by each antibody.
cells_per_ab([title])	Bar plot of non-zero read cells to antibodies.

Extended methods

run_umap(attribute[, output_label])

Extends missionbio.mosaic.assay._Assay.run_umap()