Sample.clone_vs_analyte

Sample.clone_vs_analyte(analyte='cnv', plot_width=0, subclone_order=None, protein_order=None, cbar=True)

Set of summary plots to give a run overview.

The plots have three portions:

1. The left-most is the VAF vs subclone/variant table.

2. The middle is the cell population count/fraction.

3. It depends on the input:

   • If the analyte is cnv, it shows the read count distribution plot.

   • If the analyte is protein, it shows the violin plot of proteins.

Parameters

analytestr

cnv or protein - to be used in the third plot.

plot_widthfloat

The width of the plot in points.

subclone_orderlist

A list containing order in which subclones should be displayed in resulting figure

protein_orderlist

A list containing order in which protiens should be displaued in resulting figure

cbarbool

Toggle to display/hide colorbar for heatmap