Dna.filter_barcodes
Dna.filter_barcodes#
- Dna.filter_barcodes(completeness=50)#
Remove cells with missing information.
- Parameters
- completenessfloat [0, 100]
The percentage of variants for a barcode that must not have a missing value (NGT ∈ {0, 1, 2}) to keep that barcode.
- Returns
- np.ndarray
The list of barcodes with fewer missing variants than the threshold.
Notes
The NGT_FILTERED layer is used to measure completeness. Hence the sample.dna.filter_variants() method must be called before filtering barcodes.
The “completeness” parameter here has a different meaning from the completeness parameter in the context of [cell calling](https://support.missionbio.com/hc/en-us/articles/360042381634-Cell-calling)