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Mosaic v2.4 documentation
Introduction
Installation
Getting Started
Data structure
Code Snippets
Basic usage of mosaic
Manual CNV analysis
Filtering barcodes and ids
Plot customizations
Multisample analysis
Additional plots and customizations
Mosaic analysis walk-through
Modules
io
utils
constants
missionbio.mosaic.constants.COLORS
missionbio.mosaic.constants.PCA_LABEL
missionbio.mosaic.constants.UMAP_LABEL
missionbio.mosaic.constants.SCALED_LABEL
missionbio.mosaic.constants.LABEL
missionbio.mosaic.constants.READS
missionbio.mosaic.constants.PALETTE
missionbio.mosaic.constants.NORMALIZED_READS
Classes
_Assay
Dna
Cnv
Protein
Sample
SampleGroup
.rst
.pdf
_Assay.create
_Assay.create
#
classmethod
_Assay.
create
(
assay_name
:
str
)
→
missionbio.h5.data.assay.Assay
#
Create a new empty data assay
Args:
assay_name: assay name
Returns:
new assay