Sample.assay_scatter

Sample.assay_scatter(ax=None, title='', highlight=None)

Plots DNA reads vs Protein reads.

This plot is made for all barcodes, not just called cells, and the called cells are colored.

Parameters

axmatplotlib.pyplot.axis

The axis to plot the plot on.

titlestr

The title of the plot.

highlightlist

The barcodes to highlight on the plot (besides the called cells).

Returns

axmatplotlib.pyplot.axis

Raises

ValueError

When the raw counts are not loaded.