Sample.assay_scatter

Sample.assay_scatter(ax=None, title='', highlight=None)

Plots DNA reads vs Protein reads.

This plot is made for all barcodes, not just called cells, and the called cells are colored.

Parameters
axmatplotlib.pyplot.axis

The axis to plot the plot on.

titlestr

The title of the plot.

highlightlist

The barcodes to highlight on the plot (besides the called cells).

Returns
axmatplotlib.pyplot.axis
Raises
ValueError

When the raw counts are not loaded.