Cnv¶

class missionbio.mosaic.cnv.Cnv(*args, **kwargs)¶

Container for CNV data.

Inherits most methods from missionbio.mosaic.assay._Assay. See that for the documentation on other methods and visualizations.

Algorithms

`get_gene_names`()	Fetch gene names from Ensembl for all the amplicons.
`name_id_by_pos`()	Renames the ids using the chromosome and position
`normalize_reads`()	Normalize the read counts.
`compute_ploidy`(diploid_cells[, …])	Computes the ploidy of the cells

CNV specific visualizations

`plot_ploidy`(cluster[, features])	Plots the ploidy of the cluster
`amp_uniformity`([title])	Plot amplicon uniformity.
`cell_uniformity`([title])	Plot cell uniformity.

Extended methods

heatmap(attribute[, splitby, features, …])

Extends _Assay.heatmap()

Mosaic