Cnv.scale_data

Cnv.scale_data(layer, output_label='scaled_counts')

Z-score normalization

Ensures that all id have a mean of 0 and a standard deviation of 1.

Adds scaled_counts to the layers.

Parameters

layerstr / np.array

The data to scale. Uses _Assay.get_attribute() to retrieve the value constrained by row+col.

output_labelstr, default SCALED_LABEL

The name of the output layer.