Sample.assay_scatter

missionbio.mosaic.sample.Sample.assay_scatter

Sample.assay_scatter(ax=None, title='', highlight=None)

Plots DNA reads vs Protein reads.

This plot is made for all barcodes, not just called cells, and the called cells are colored.

It requires cnv_raw and protein_raw to be loaded.

Parameters:

axmatplotlib.pyplot.axis

The axis to plot the plot on.

titlestr

The title of the plot.

highlightlist

The barcodes to highlight on the plot (besides the called cells).

Returns:

axmatplotlib.pyplot.axis

Raises:

ValueError

When the raw counts are not loaded.