Truth.remove_correlated_variants

missionbio.demultiplex.dna.truth.Truth.remove_correlated_variants

Truth.remove_correlated_variants(dna: Assay) → Tuple[Truth, list]

Remove correlated variants on the same amplicon

Parameters:

dna – The DNA assay object

Returns:

DataFrame of truth list: Correlated variants

Return type:

pd.DataFrame

Raises:

AllVariantsFilteredError – When all the variants get filtered out. This happens if the variants are strictly correlated with each other.

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< Class Truth